IL_6QZP_046

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

6QZP|1|L5|A|1650, 6QZP|1|L5|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|C|1520
6QZP|1|L5|C|1521
6QZP|1|L5|OMG|1522
6QZP|1|L5|A|1523
6QZP|1|L5|A2M|1524
6QZP|1|L5|A|1525
6QZP|1|L5|G|1526
*
6QZP|1|L5|C|1648
6QZP|1|L5|U|1649
6QZP|1|L5|A|1650
6QZP|1|L5|G|1651
6QZP|1|L5|U|1652
6QZP|1|L5|A|1653
6QZP|1|L5|G|1654
6QZP|1|L5|C|1655
6QZP|1|L5|U|1656
6QZP|1|L5|G|1657

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a

Chain Lj

60S ribosomal protein L37