IL_6QZP_067

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

6QZP|1|L5|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_067 not in the Motif Atlas

Homologous match to IL_8GLP_077

Geometric discrepancy: 0.14

The information below is about IL_8GLP_077

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

6QZP|1|L5|U|1918
6QZP|1|L5|G|1919
6QZP|1|L5|C|1920
*
6QZP|1|L5|G|2063
6QZP|1|L5|G|2064

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a

Chain Lf

60S ribosomal protein L35a