IL_6QZP_072

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUAGACAGCAGG*CCUGCCGAA

Length

22 nucleotides

Bulged bases

6QZP|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|U|1957
6QZP|1|L5|A|1958
6QZP|1|L5|U|1959
6QZP|1|L5|A|1960
6QZP|1|L5|G|1961
6QZP|1|L5|A|1962
6QZP|1|L5|C|1963
6QZP|1|L5|A|1964
6QZP|1|L5|G|1965
6QZP|1|L5|C|1966
6QZP|1|L5|A|1967
6QZP|1|L5|G|1968
6QZP|1|L5|G|1969
*
6QZP|1|L5|C|2018
6QZP|1|L5|C|2019
6QZP|1|L5|U|2020
6QZP|1|L5|G|2021
6QZP|1|L5|C|2022
6QZP|1|L5|C|2023
6QZP|1|L5|G|2024
6QZP|1|L5|A|2025
6QZP|1|L5|A|2026

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain Lm

Ubiquitin-60S ribosomal protein L40