IL_6QZP_073

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

6QZP|1|L5|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_073 not in the Motif Atlas

Geometric match to IL_4C7O_003

Geometric discrepancy: 0.2695

The information below is about IL_4C7O_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6QZP|1|L5|C|2083
6QZP|1|L5|C|2084
6QZP|1|L5|G|2085
*
6QZP|1|L5|C|2272
6QZP|1|L5|G|2273

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain Le

60S ribosomal protein L32