IL_6QZP_085

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6QZP|1|L5|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_085 not in the Motif Atlas

Geometric match to IL_7RQB_069

Geometric discrepancy: 0.3954

The information below is about IL_7RQB_069

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6QZP|1|L5|C|2613
6QZP|1|L5|C|2614
*
6QZP|1|L5|G|2724
6QZP|1|L5|A|2725
6QZP|1|L5|G|2726

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34