IL_6QZP_097

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGGUCGG*CGGCGCCUAGCA

Length

20 nucleotides

Bulged bases

6QZP|1|L5|G|2903, 6QZP|1|L5|G|2906, 6QZP|1|L5|C|3593, 6QZP|1|L5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|U|2900
6QZP|1|L5|G|2901
6QZP|1|L5|G|2902
6QZP|1|L5|G|2903
6QZP|1|L5|U|2904
6QZP|1|L5|C|2905
6QZP|1|L5|G|2906
6QZP|1|L5|G|2907
*
6QZP|1|L5|C|3588
6QZP|1|L5|G|3589
6QZP|1|L5|G|3590
6QZP|1|L5|C|3591
6QZP|1|L5|G|3592
6QZP|1|L5|C|3593
6QZP|1|L5|C|3594
6QZP|1|L5|U|3595
6QZP|1|L5|A|3596
6QZP|1|L5|G|3597
6QZP|1|L5|C|3598
6QZP|1|L5|A|3599

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11