IL_6QZP_103

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_103 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.5391

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6QZP|1|L5|G|3710
6QZP|1|L5|A|3711
6QZP|1|L5|A|3712
6QZP|1|L5|U|3713
6QZP|1|L5|G|3714
*
6QZP|1|L5|C|3739
6QZP|1|L5|G|3740
6QZP|1|L5|C|3741

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain S6

Transfer RNA; tRNA