IL_6QZP_104

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(PSU)CA(A2M)AGU*AAUGAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|G|3714
6QZP|1|L5|PSU|3715
6QZP|1|L5|C|3716
6QZP|1|L5|A|3717
6QZP|1|L5|A2M|3718
6QZP|1|L5|A|3719
6QZP|1|L5|G|3720
6QZP|1|L5|U|3721
*
6QZP|1|L5|A|3732
6QZP|1|L5|A|3733
6QZP|1|L5|U|3734
6QZP|1|L5|G|3735
6QZP|1|L5|A|3736
6QZP|1|L5|A|3737
6QZP|1|L5|G|3738
6QZP|1|L5|C|3739

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a

Chain S6

Transfer RNA; tRNA