IL_6QZP_109

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6QZP|1|L5|A|3901, 6QZP|1|L5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_109 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.1149

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6QZP|1|L5|G|3900
6QZP|1|L5|A|3901
6QZP|1|L5|A|3902
*
6QZP|1|L5|U|4558
6QZP|1|L5|A|4559
6QZP|1|L5|C|4560
6QZP|1|L5|C|4561

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17