IL_6QZP_117

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

6QZP|1|L5|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_117 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1842

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

6QZP|1|L5|G|4291
6QZP|1|L5|A|4292
6QZP|1|L5|PSU|4293
6QZP|1|L5|C|4294
*
6QZP|1|L5|G|4316
6QZP|1|L5|A|4317
6QZP|1|L5|C|4318

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a