IL_6QZP_120

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGC(PSU)UG*UGA(PSU)CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|G|4400
6QZP|1|L5|G|4401
6QZP|1|L5|C|4402
6QZP|1|L5|PSU|4403
6QZP|1|L5|U|4404
6QZP|1|L5|G|4405
*
6QZP|1|L5|U|4439
6QZP|1|L5|G|4440
6QZP|1|L5|A|4441
6QZP|1|L5|PSU|4442
6QZP|1|L5|C|4443
6QZP|1|L5|C|4444

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29