IL_6QZP_134

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6QZP|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_134 not in the Motif Atlas

Geometric match to IL_6E7L_002

Geometric discrepancy: 0.3583

The information below is about IL_6E7L_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_10484.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6QZP|1|L5|C|4582
6QZP|1|L5|C|4583
6QZP|1|L5|A|4584
6QZP|1|L5|U|4585
*
6QZP|1|L5|A|4717
6QZP|1|L5|G|4718
6QZP|1|L5|G|4719
6QZP|1|L5|C|4720
6QZP|1|L5|G|4721

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a