IL_6QZP_145

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCGGAUAG*U(OMG)C(2MG)GAGUG

Length

19 nucleotides

Bulged bases

6QZP|1|L5|C|4757, 6QZP|1|L5|U|4758, 6QZP|1|L5|A|4764, 6QZP|1|L5|C|4871, 6QZP|1|L5|G|4873, 6QZP|1|L5|A|4874, 6QZP|1|L5|U|4876

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|C|4756
6QZP|1|L5|C|4757
6QZP|1|L5|U|4758
6QZP|1|L5|C|4759
6QZP|1|L5|G|4760
6QZP|1|L5|G|4761
6QZP|1|L5|A|4762
6QZP|1|L5|U|4763
6QZP|1|L5|A|4764
6QZP|1|L5|G|4765
*
6QZP|1|L5|U|4869
6QZP|1|L5|OMG|4870
6QZP|1|L5|C|4871
6QZP|1|L5|2MG|4872
6QZP|1|L5|G|4873
6QZP|1|L5|A|4874
6QZP|1|L5|G|4875
6QZP|1|L5|U|4876
6QZP|1|L5|G|4877

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a