IL_6QZP_208

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_208 not in the Motif Atlas

Geometric match to IL_5J7L_061

Geometric discrepancy: 0.2087

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6QZP|1|S2|C|877
6QZP|1|S2|G|878
6QZP|1|S2|C|879
*
6QZP|1|S2|G|907
6QZP|1|S2|A|908
6QZP|1|S2|G|909

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SH

40S ribosomal protein S7