IL_6QZP_231

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6QZP|1|S2|U|1326

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_231 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.1412

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6QZP|1|S2|G|1325
6QZP|1|S2|U|1326
6QZP|1|S2|G|1327
*
6QZP|1|S2|C|1502
6QZP|1|S2|C|1503

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29