IL_6QZP_234
3D structure
- PDB id
- 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- C(4AC)G*CAGG
- Length
- 7 nucleotides
- Bulged bases
- 6QZP|1|S2|A|1489
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QZP_234 not in the Motif Atlas
- Geometric match to IL_4X4N_005
- Geometric discrepancy: 0.1656
- The information below is about IL_4X4N_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
6QZP|1|S2|C|1336
6QZP|1|S2|4AC|1337
6QZP|1|S2|G|1338
*
6QZP|1|S2|C|1488
6QZP|1|S2|A|1489
6QZP|1|S2|G|1490
6QZP|1|S2|G|1491
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- 40S ribosomal protein S3
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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