IL_6QZP_239

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAC*GUCCCCCAA

Length

13 nucleotides

Bulged bases

6QZP|1|S2|C|1433, 6QZP|1|S2|C|1434

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_239 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2135

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6QZP|1|S2|U|1407
6QZP|1|S2|U|1408
6QZP|1|S2|A|1409
6QZP|1|S2|C|1410
*
6QZP|1|S2|G|1431
6QZP|1|S2|U|1432
6QZP|1|S2|C|1433
6QZP|1|S2|C|1434
6QZP|1|S2|C|1435
6QZP|1|S2|C|1436
6QZP|1|S2|C|1437
6QZP|1|S2|A|1438
6QZP|1|S2|A|1439

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20