IL_6QZP_260
3D structure
- PDB id
- 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUCC*GGC
- Length
- 8 nucleotides
- Bulged bases
- 6QZP|1|L5|G|483, 6QZP|1|L5|U|484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QZP_260 not in the Motif Atlas
- Geometric match to IL_5J7L_363
- Geometric discrepancy: 0.188
- The information below is about IL_5J7L_363
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
6QZP|1|L5|G|482
6QZP|1|L5|G|483
6QZP|1|L5|U|484
6QZP|1|L5|C|485
6QZP|1|L5|C|486
*
6QZP|1|L5|G|670
6QZP|1|L5|G|671
6QZP|1|L5|C|672
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain Lr
- 60S ribosomal protein L28
Coloring options: