IL_6QZP_263

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CGGC

Length

7 nucleotides

Bulged bases

6QZP|1|L5|G|1266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_263 not in the Motif Atlas

Geometric match to IL_7ECO_005

Geometric discrepancy: 0.2637

The information below is about IL_7ECO_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6QZP|1|L5|G|1244
6QZP|1|L5|C|1245
6QZP|1|L5|G|1246
*
6QZP|1|L5|C|1264
6QZP|1|L5|G|1265
6QZP|1|L5|G|1266
6QZP|1|L5|C|1267

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29