IL_6QZP_269

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGGCCGGAGCCC*GGACGCUACG

Length

46 nucleotides

Bulged bases

6QZP|1|L5|G|2096, 6QZP|1|L5|U|2097, 6QZP|1|L5|C|2255, 6QZP|1|L5|C|2266, 6QZP|1|L5|U|2267, 6QZP|1|L5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|C|2087
6QZP|1|L5|A|2088
6QZP|1|L5|G|2089
6QZP|1|L5|U|2090
6QZP|1|L5|C|2091
6QZP|1|L5|G|2092
6QZP|1|L5|A|2093
6QZP|1|L5|G|2094
6QZP|1|L5|A|2095
6QZP|1|L5|G|2096
6QZP|1|L5|U|2097
6QZP|1|L5|G|2098
6QZP|1|L5|G|2099
6QZP|1|L5|A|2100
6QZP|1|L5|C|2101
6QZP|1|L5|G|2102
6QZP|1|L5|G|2103
6QZP|1|L5|G|2104
6QZP|1|L5|A|2105
6QZP|1|L5|G|2106
6QZP|1|L5|C|2107
6QZP|1|L5|G|2108
6QZP|1|L5|G|2109
6QZP|1|L5|C|2110
6QZP|1|L5|G|2111
6QZP|1|L5|G|2112
6QZP|1|L5|G|2113
6QZP|1|L5|C|2249
6QZP|1|L5|C|2250
6QZP|1|L5|G|2251
6QZP|1|L5|G|2252
6QZP|1|L5|A|2253
6QZP|1|L5|G|2254
6QZP|1|L5|C|2255
6QZP|1|L5|C|2256
6QZP|1|L5|C|2257
*
6QZP|1|L5|G|2261
6QZP|1|L5|G|2262
6QZP|1|L5|A|2263
6QZP|1|L5|C|2264
6QZP|1|L5|G|2265
6QZP|1|L5|C|2266
6QZP|1|L5|U|2267
6QZP|1|L5|A|2268
6QZP|1|L5|C|2269
6QZP|1|L5|G|2270

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29

Chain Lr

60S ribosomal protein L28