IL_6QZP_271

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_271 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0878

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6QZP|1|L5|G|2847
6QZP|1|L5|G|2848
6QZP|1|L5|A|2849
6QZP|1|L5|A|2850
6QZP|1|L5|G|2851
6QZP|1|L5|U|2852
6QZP|1|L5|C|2853
6QZP|1|L5|G|2854
6QZP|1|L5|G|2855
*
6QZP|1|L5|C|3837
6QZP|1|L5|U|3838
6QZP|1|L5|G|3839
6QZP|1|L5|U|3840
6QZP|1|L5|C|3841

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23