IL_6QZP_273

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

6QZP|1|L5|A2M|3785, 6QZP|1|L5|C|3791, 6QZP|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_273 not in the Motif Atlas

Homologous match to IL_8P9A_318

Geometric discrepancy: 0.0986

The information below is about IL_8P9A_318

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

6QZP|1|L5|C|3781
6QZP|1|L5|5MC|3782
6QZP|1|L5|A|3783
6QZP|1|L5|A|3784
6QZP|1|L5|A2M|3785
6QZP|1|L5|U|3786
6QZP|1|L5|G|3787
6QZP|1|L5|C|3788
6QZP|1|L5|C|3789
6QZP|1|L5|U|3790
6QZP|1|L5|C|3791
6QZP|1|L5|OMG|3792
*
6QZP|1|L5|C|3808
6QZP|1|L5|G|3809
6QZP|1|L5|C|3810
6QZP|1|L5|G|3811

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA