IL_6QZP_298

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

6QZP|1|S2|C|1434, 6QZP|1|S2|C|1436, 6QZP|1|S2|C|1437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_298 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2685

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

6QZP|1|S2|U|1408
6QZP|1|S2|A|1409
*
6QZP|1|S2|U|1432
6QZP|1|S2|C|1433
6QZP|1|S2|C|1434
6QZP|1|S2|C|1435
6QZP|1|S2|C|1436
6QZP|1|S2|C|1437
6QZP|1|S2|A|1438

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20