Loop IL_6QZP

3D structure

PDB id: 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
Description: High-resolution cryo-EM structure of the human 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: GUGGCGCAGCGGAAGCGUGCUGGG*CCCAGAGGUCGAUGGAUCGAAACCAUCC
Length: 52 nucleotides
Bulged bases: 6QZP|1|S6|C|17, 6QZP|1|S6|A|20, 6QZP|1|S6|C|40, 6QZP|1|S6|U|47, 6QZP|1|S6|C|56
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6QZP|1|S6|G|8
6QZP|1|S6|U|9
6QZP|1|S6|G|10
6QZP|1|S6|G|11
6QZP|1|S6|C|12
6QZP|1|S6|G|13
6QZP|1|S6|C|14
6QZP|1|S6|A|15
6QZP|1|S6|G|16
6QZP|1|S6|C|17
6QZP|1|S6|G|18
6QZP|1|S6|G|19
6QZP|1|S6|A|20
6QZP|1|S6|A|21
6QZP|1|S6|G|22
6QZP|1|S6|C|23
6QZP|1|S6|G|24
6QZP|1|S6|U|25
6QZP|1|S6|G|26
6QZP|1|S6|C|27
6QZP|1|S6|U|28
6QZP|1|S6|G|29
6QZP|1|S6|G|30
6QZP|1|S6|G|31
*
6QZP|1|S6|C|39
6QZP|1|S6|C|40
6QZP|1|S6|C|41
6QZP|1|S6|A|42
6QZP|1|S6|G|43
6QZP|1|S6|A|44
6QZP|1|S6|G|45
6QZP|1|S6|G|46
6QZP|1|S6|U|47
6QZP|1|S6|C|48
6QZP|1|S6|G|49
6QZP|1|S6|A|50
6QZP|1|S6|U|51
6QZP|1|S6|G|52
6QZP|1|S6|G|53
6QZP|1|S6|A|54
6QZP|1|S6|U|55
6QZP|1|S6|C|56
6QZP|1|S6|G|57
6QZP|1|S6|A|58
6QZP|1|S6|A|59
6QZP|1|S6|A|60
6QZP|1|S6|C|61
6QZP|1|S6|C|62
6QZP|1|S6|A|63
6QZP|1|S6|U|64
6QZP|1|S6|C|65
6QZP|1|S6|C|66

Current chains

Chain S6: E site tRNA (75-MER)

Nearby chains

Chain L5: Large subunit ribosomal RNA; LSU rRNA
Chain Lo: 60S ribosomal protein L36a
Chain Lz: 60S ribosomal protein L10a
Chain SF: 40S ribosomal protein S5
Chain SO: 40S ribosomal protein S14

IL_6QZP_300