3D structure

PDB id
6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGGUAA*UAAAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R5Q_063 not in the Motif Atlas
Geometric match to IL_7A0S_027
Geometric discrepancy: 0.1949
The information below is about IL_7A0S_027
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_81631.1
Basepair signature
cWW-L-R-cSH-R-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

6R5Q|1|5|C|1732
6R5Q|1|5|G|1733
6R5Q|1|5|G|1734
6R5Q|1|5|U|1735
6R5Q|1|5|A|1736
6R5Q|1|5|A|1737
*
6R5Q|1|5|U|1792
6R5Q|1|5|A|1793
6R5Q|1|5|A|1794
6R5Q|1|5|A|1795
6R5Q|1|5|U|1796
6R5Q|1|5|G|1797

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain F
uL30
Chain I
Ribosomal protein L10 (Predicted)
Chain S
eL20
Chain T
eL21

Coloring options:


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