IL_6R5Q_076

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

6R5Q|1|5|C|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_076 not in the Motif Atlas

Geometric match to IL_8CRE_390

Geometric discrepancy: 0.3434

The information below is about IL_8CRE_390

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6R5Q|1|5|C|1920
6R5Q|1|5|C|1921
6R5Q|1|5|G|1922
*
6R5Q|1|5|C|2062
6R5Q|1|5|G|2063

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

uL30

Chain M

Ribosomal protein L14

Chain O

uL13

Chain S

eL20

Chain f

eL33