IL_6R5Q_097

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6R5Q|1|5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_097 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.211

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6R5Q|1|5|C|2646
6R5Q|1|5|A|2647
6R5Q|1|5|G|2648
*
6R5Q|1|5|C|2685
6R5Q|1|5|G|2686
6R5Q|1|5|U|2687
6R5Q|1|5|G|2688

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain g

eL34