IL_6R5Q_106

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_106 not in the Motif Atlas

Homologous match to IL_8C3A_085

Geometric discrepancy: 0.0865

The information below is about IL_8C3A_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6R5Q|1|5|G|2889
6R5Q|1|5|C|2890
6R5Q|1|5|U|2891
*
6R5Q|1|5|A|3610
6R5Q|1|5|A|3611
6R5Q|1|5|C|3612

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain K

Small subunit ribosomal RNA; SSU rRNA

Chain R

eL19