IL_6R5Q_137

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_137 not in the Motif Atlas

Homologous match to IL_8C3A_118

Geometric discrepancy: 0.1365

The information below is about IL_8C3A_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6R5Q|1|5|C|4466
6R5Q|1|5|A|4467
6R5Q|1|5|U|4468
*
6R5Q|1|5|G|4489
6R5Q|1|5|C|4490
6R5Q|1|5|G|4491

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

eL14