IL_6R5Q_140

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6R5Q|1|5|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_140 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.1569

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6R5Q|1|5|C|4537
6R5Q|1|5|G|4538
*
6R5Q|1|5|C|4547
6R5Q|1|5|A|4548
6R5Q|1|5|G|4549

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain A

uL2