IL_6R5Q_247

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_247 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.0992

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6R5Q|1|K|A|1537
6R5Q|1|K|C|1538
6R5Q|1|K|U|1539
*
6R5Q|1|K|A|1594
6R5Q|1|K|U|1595
6R5Q|1|K|U|1596

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain II

uS13

Chain OO

ribosomal protein eS25

Chain PP

eS19

Chain y

Ribosomal protein S5