IL_6R5Q_284

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

6R5Q|1|K|U|1585, 6R5Q|1|K|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R5Q|1|K|G|1541
6R5Q|1|K|C|1542
6R5Q|1|K|U|1543
6R5Q|1|K|C|1544
6R5Q|1|K|A|1545
6R5Q|1|K|G|1546
6R5Q|1|K|C|1547
6R5Q|1|K|G|1548
6R5Q|1|K|U|1549
6R5Q|1|K|G|1550
*
6R5Q|1|K|C|1582
6R5Q|1|K|C|1583
6R5Q|1|K|G|1584
6R5Q|1|K|U|1585
6R5Q|1|K|U|1586
6R5Q|1|K|G|1587
6R5Q|1|K|A|1588
6R5Q|1|K|A|1589
6R5Q|1|K|C|1590
6R5Q|1|K|C|1591
6R5Q|1|K|C|1592

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 9

uS14

Chain GG

uS10

Chain OO

ribosomal protein eS25

Chain PP

eS19

Chain UU

Ribosomal protein S16

Chain w

Ribosomal protein S3

Chain y

Ribosomal protein S5