IL_6R6G_036

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

6R6G|1|5|C|614, 6R6G|1|5|C|615, 6R6G|1|5|C|660, 6R6G|1|5|C|661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_036 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2999

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6R6G|1|5|C|613
6R6G|1|5|C|614
6R6G|1|5|C|615
6R6G|1|5|G|616
*
6R6G|1|5|C|659
6R6G|1|5|C|660
6R6G|1|5|C|661
6R6G|1|5|G|662

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain M

Ribosomal protein L14