3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UCU*GAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_038 not in the Motif Atlas
Geometric match to IL_7A0S_031
Geometric discrepancy: 0.232
The information below is about IL_7A0S_031
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

6R6G|1|5|U|718
6R6G|1|5|C|719
6R6G|1|5|U|720
*
6R6G|1|5|G|834
6R6G|1|5|A|835
6R6G|1|5|G|836

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain E
60S ribosomal protein L6
Chain F
uL30
Chain b
eL29

Coloring options:


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