IL_6R6G_047

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

6R6G|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_047 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1726

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6R6G|1|5|G|921
6R6G|1|5|G|922
*
6R6G|1|5|C|934
6R6G|1|5|G|935
6R6G|1|5|C|936
6R6G|1|5|C|937

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15