IL_6R6G_050

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCC*GGAG

Length

7 nucleotides

Bulged bases

6R6G|1|5|A|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_050 not in the Motif Atlas

Geometric match to IL_4AOB_005

Geometric discrepancy: 0.2398

The information below is about IL_4AOB_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6R6G|1|5|C|1027
6R6G|1|5|C|1028
6R6G|1|5|C|1029
*
6R6G|1|5|G|1055
6R6G|1|5|G|1056
6R6G|1|5|A|1057
6R6G|1|5|G|1058

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Q

eL18

Chain a

uL15

Chain b

eL29