IL_6R6G_052

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_052 not in the Motif Atlas

Geometric match to IL_7RQB_017

Geometric discrepancy: 0.1758

The information below is about IL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

6R6G|1|5|C|1080
6R6G|1|5|C|1081
6R6G|1|5|G|1082
*
6R6G|1|5|C|1215
6R6G|1|5|U|1216
6R6G|1|5|G|1217

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain a

uL15