3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GC*GGU
Length
5 nucleotides
Bulged bases
6R6G|1|5|G|1137
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_054 not in the Motif Atlas
Geometric match to IL_4V9F_026
Geometric discrepancy: 0.1952
The information below is about IL_4V9F_026
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

6R6G|1|5|G|1110
6R6G|1|5|C|1111
*
6R6G|1|5|G|1136
6R6G|1|5|G|1137
6R6G|1|5|U|1138

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain A
uL2
Chain R
60S ribosomal protein L19
Chain p
ribosomal protein eL43

Coloring options:


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