IL_6R6G_082

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6R6G|1|5|A|1539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_082 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2587

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6R6G|1|5|G|1538
6R6G|1|5|A|1539
6R6G|1|5|G|1540
6R6G|1|5|U|1541
6R6G|1|5|G|1542
*
6R6G|1|5|C|1551
6R6G|1|5|U|1552
6R6G|1|5|C|1553

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

uL11