IL_6R6G_087
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAG*CG
- Length
- 5 nucleotides
- Bulged bases
- 6R6G|1|5|A|1706
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_087 not in the Motif Atlas
- Geometric match to IL_5WWT_001
- Geometric discrepancy: 0.218
- The information below is about IL_5WWT_001
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 132
Unit IDs
6R6G|1|5|U|1705
6R6G|1|5|A|1706
6R6G|1|5|G|1707
*
6R6G|1|5|C|1718
6R6G|1|5|G|1719
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain e
- eL32
- Chain r
- eL28
Coloring options: