IL_6R6G_097

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6R6G|1|5|U|2080

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_097 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2199

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6R6G|1|5|C|2039
6R6G|1|5|A|2040
6R6G|1|5|G|2041
*
6R6G|1|5|C|2078
6R6G|1|5|G|2079
6R6G|1|5|U|2080
6R6G|1|5|G|2081

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain g

eL34