3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_103 not in the Motif Atlas
Homologous match to IL_8C3A_082
Geometric discrepancy: 0.1696
The information below is about IL_8C3A_082
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.4
Basepair signature
cWW-cWW-tSH-cWW-R
Number of instances in this motif group
28

Unit IDs

6R6G|1|5|G|2240
6R6G|1|5|G|2241
6R6G|1|5|A|2242
6R6G|1|5|A|2243
*
6R6G|1|5|U|2538
6R6G|1|5|C|2539

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain V
eL14

Coloring options:


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