IL_6R6G_113

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

6R6G|1|5|A|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_113 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.2822

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6R6G|1|5|G|2408
6R6G|1|5|A|2409
6R6G|1|5|A|2410
6R6G|1|5|U|2411
6R6G|1|5|G|2412
*
6R6G|1|5|C|2437
6R6G|1|5|G|2438
6R6G|1|5|C|2439

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain A

uL2

Chain K

Small subunit ribosomal RNA; SSU rRNA