IL_6R6G_118

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6R6G|1|5|A|2599, 6R6G|1|5|A|3129, 6R6G|1|5|C|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_118 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.1694

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6R6G|1|5|G|2598
6R6G|1|5|A|2599
6R6G|1|5|A|2600
*
6R6G|1|5|U|3128
6R6G|1|5|A|3129
6R6G|1|5|C|3130
6R6G|1|5|C|3131

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 1

X-box-binding protein 1

Chain B

uL3

Chain P

uL22