IL_6R6G_121
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAG*UGGG
- Length
- 7 nucleotides
- Bulged bases
- 6R6G|1|5|G|2753
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_121 not in the Motif Atlas
- Homologous match to IL_5TBW_095
- Geometric discrepancy: 0.1404
- The information below is about IL_5TBW_095
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.10
- Basepair signature
- cWW-cWW-cWW-tHS
- Number of instances in this motif group
- 9
Unit IDs
6R6G|1|5|U|2625
6R6G|1|5|A|2626
6R6G|1|5|G|2627
*
6R6G|1|5|U|2751
6R6G|1|5|G|2752
6R6G|1|5|G|2753
6R6G|1|5|G|2754
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain N
- Ribosomal protein L15
- Chain o
- eL42
Coloring options: