IL_6R6G_122
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 6R6G|1|5|G|2666, 6R6G|1|5|G|2668, 6R6G|1|5|G|2669, 6R6G|1|5|C|2732, 6R6G|1|5|U|2733
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_122 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2424
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
6R6G|1|5|G|2664
6R6G|1|5|U|2665
6R6G|1|5|G|2666
6R6G|1|5|A|2667
6R6G|1|5|G|2668
6R6G|1|5|G|2669
6R6G|1|5|C|2670
*
6R6G|1|5|G|2731
6R6G|1|5|C|2732
6R6G|1|5|U|2733
6R6G|1|5|C|2734
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- uL2
- Chain G
- eL8
- Chain X
- uL23
Coloring options: