IL_6R6G_129

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_129 not in the Motif Atlas

Geometric match to IL_5TBW_102

Geometric discrepancy: 0.1691

The information below is about IL_5TBW_102

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6R6G|1|5|G|2970
6R6G|1|5|G|2971
*
6R6G|1|5|U|3012
6R6G|1|5|C|3013
6R6G|1|5|C|3014

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain I

Ribosomal protein L10 (Predicted)

Chain b

eL29