IL_6R6G_133

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_133 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.123

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6R6G|1|5|C|2982
6R6G|1|5|C|2983
6R6G|1|5|A|2984
6R6G|1|5|A|2985
6R6G|1|5|G|2986
*
6R6G|1|5|C|2996
6R6G|1|5|G|2997
6R6G|1|5|A|2998
6R6G|1|5|C|2999
6R6G|1|5|G|3000

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain m

60S ribosomal protein L40