IL_6R6G_135

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6R6G|1|5|G|3092, 6R6G|1|5|A|3093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_135 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1617

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6R6G|1|5|C|3026
6R6G|1|5|U|3027
6R6G|1|5|C|3028
*
6R6G|1|5|G|3090
6R6G|1|5|U|3091
6R6G|1|5|G|3092
6R6G|1|5|A|3093
6R6G|1|5|G|3094

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 1

X-box-binding protein 1

Chain B

uL3

Chain V

eL14