IL_6R6G_173

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_173 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2127

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6R6G|1|AF|G|55
6R6G|1|AF|A|56
6R6G|1|AF|G|57
*
6R6G|1|AF|C|290
6R6G|1|AF|C|291

Current chains

Chain AF

7S RNA

Nearby chains

Chain AD

Signal recognition particle 9 kDa protein

Chain AE

Signal recognition particle 14 kDa protein